There are no additional smallcase charges for rebalancing.

Zerodha charges for delivery orders would be applicable:

Brokerage Charges: ₹0 (if you don't buy/sell a stock on the same day)
Exchange Turnover Fees: 0.00325% of the traded value
GST: 18% of brokerage & exchange turnover fees
Securities Transaction Tax: 0.1% of the traded value
Stamp Duty: 0.01% (varies with state)
SEBI Charges: 0.0002%
Demat charges per stock (irrespective of quantity/shares sold on one day) when you sell

  • CDSL (Zerodha DP) demat charges: ₹13.5 + GST (18%) 
  • NSDL (IL&FS DP) demat charges: ₹12.5 + GST (18%)
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